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Bioconductor - roar (development version)

roar

This is the development version of roar; for the stable release version, see roar.

Identify differential APA usage from RNA-seq alignments

Bioconductor version: Development (3.22)

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("roar")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("roar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")
Identify differential APA usage from RNA-seq alignments PDF R Script Reference Manual PDF NEWS Text Details biocViews HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription Version 1.45.0 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License GPL-3 Depends R (>= 3.0.1) Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb System Requirements URL https://github.com/vodkatad/roar/ See More Package Archives

Follow Installation instructions to use this package in your R session.

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