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Bioconductor - rigvf (development version)

rigvf

This is the development version of rigvf; for the stable release version, see rigvf.

R interface to the IGVF Catalog

Bioconductor version: Development (3.22)

The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.

Author: Martin Morgan [aut] ORCID: 0000-0002-5874-8148 , Michael Love [aut, cre] ORCID: 0000-0001-8401-0545 , NIH NHGRI UM1HG012003 [fnd]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("rigvf")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rigvf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rigvf")
Details biocViews Annotation, FunctionalGenomics, GeneRegulation, GeneTarget, GenomicVariation, Software, ThirdPartyClient, VariantAnnotation Version 1.1.2 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License MIT + file LICENSE Depends R (>= 4.1.0) Imports methods, httr2, rjsoncons, dplyr, tidyr, rlang, memoise, cachem, whisker, jsonlite, GenomicRanges, IRanges, GenomeInfoDb System Requirements URL https://IGVF.github.io/rigvf Bug Reports https://github.com/IGVF/rigvf/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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