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Bioconductor - rhinotypeR (development version)

This is the development version of rhinotypeR; for the stable release version, see rhinotypeR.

Bioconductor version: Development (3.22)

"rhinotypeR" is designed to automate the comparison of sequence data against prototype strains, streamlining the genotype assignment process. By implementing predefined pairwise distance thresholds, this package makes genotype assignment accessible to researchers and public health professionals. This tool enhances our epidemiological toolkit by enabling more efficient surveillance and analysis of rhinoviruses (RVs) and other viral pathogens with complex genomic landscapes. Additionally, "rhinotypeR" supports comprehensive visualization and analysis of single nucleotide polymorphisms (SNPs) and amino acid substitutions, facilitating in-depth genetic and evolutionary studies.

Author: Martha Luka [aut, cre] ORCID: 0000-0001-6217-4426 , Ruth Nanjala [aut], Winfred Gatua [aut], Wafaa M. Rashed [aut], Olaitan Awe [aut]

Maintainer: Martha Luka <marthaluka20 at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rhinotypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhinotypeR")

Follow Installation instructions to use this package in your R session.

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