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Bioconductor - rWikiPathways (development version)

rWikiPathways

This is the development version of rWikiPathways; for the stable release version, see rWikiPathways.

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: Development (3.22)

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

Author: Egon Willighagen [aut, cre] ORCID: 0000-0001-7542-0286 , Alex Pico [aut] ORCID: 0000-0001-5706-2163

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("rWikiPathways")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")
Details biocViews GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License MIT + file LICENSE Depends Imports httr, utils, XML, rjson, data.table, RCurl, dplyr, tidyr, readr, stringr, purrr, lubridate System Requirements URL https://github.com/wikipathways/rwikipathways Bug Reports https://github.com/wikipathways/rwikipathways/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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