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Bioconductor - qcmetrics (development version)

qcmetrics

This is the development version of qcmetrics; for the stable release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: Development (3.22)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("qcmetrics")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")
Index file for the qcmetrics package vignette HTML R Script Reference Manual PDF Details biocViews ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization Version 1.47.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License GPL-2 Depends R (>= 3.3) Imports Biobase, methods, knitr, tools, xtable, pander, S4Vectors System Requirements URL http://lgatto.github.io/qcmetrics/articles/qcmetrics.html Bug Reports https://github.com/lgatto/qcmetrics/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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