This is the development version of pram; for the stable release version, see pram.
Pooling RNA-seq datasets for assembling transcript modelsBioconductor version: Development (3.22)
Publicly available RNA-seq data is routinely used for retrospective analysis to elucidate new biology. Novel transcript discovery enabled by large collections of RNA-seq datasets has emerged as one of such analysis. To increase the power of transcript discovery from large collections of RNA-seq datasets, we developed a new R package named Pooling RNA-seq and Assembling Models (PRAM), which builds transcript models in intergenic regions from pooled RNA-seq datasets. This package includes functions for defining intergenic regions, extracting and pooling related RNA-seq alignments, predicting, selected, and evaluating transcript models.
Author: Peng Liu [aut, cre], Colin N. Dewey [aut], Sündüz KeleŠ[aut]
Maintainer: Peng Liu <pliu55.wisc+bioconductor at gmail.com>
Citation (from within R, entercitation("pram")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pram")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pram")Follow Installation instructions to use this package in your R session.
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