This is the development version of planttfhunter; for the stable release version, see planttfhunter.
Identification and classification of plant transcription factorsBioconductor version: Development (3.22)
planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.
Author: FabrÃcio Almeida-Silva [aut, cre] ORCID: 0000-0002-5314-2964 , Yves Van de Peer [aut] ORCID: 0000-0003-4327-3730
Maintainer: FabrÃcio Almeida-Silva <fabricio_almeidasilva at hotmail.com>
Citation (from within R, entercitation("planttfhunter")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("planttfhunter")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("planttfhunter")Follow Installation instructions to use this package in your R session.
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