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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../html/pepXMLTab.html below:

Bioconductor - pepXMLTab (development version)

This is the development version of pepXMLTab; for the stable release version, see pepXMLTab.

Bioconductor version: Development (3.22)

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pepXMLTab")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pepXMLTab")

Follow Installation instructions to use this package in your R session.

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