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Bioconductor - moanin (development version)

moanin

This is the development version of moanin; for the stable release version, see moanin.

An R Package for Time Course RNASeq Data Analysis

Bioconductor version: Development (3.22)

Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.

Author: Elizabeth Purdom [aut] ORCID: 0000-0001-9455-7990 , Nelle Varoquaux [aut, cre] ORCID: 0000-0002-8748-6546

Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>

Citation (from within R, enter citation("moanin")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("moanin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("moanin")
Details biocViews Clustering, DifferentialExpression, GeneExpression, Microarray, RNASeq, Software, TimeCourse Version 1.17.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License BSD 3-clause License + file LICENSE Depends R (>= 4.0), SummarizedExperiment, topGO, stats Imports S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics, methods, grDevices, reshape2, NMI, zoo, ClusterR, splines, matrixStats System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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