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Bioconductor - microbiomeDASim (development version)

microbiomeDASim

This is the development version of microbiomeDASim; for the stable release version, see microbiomeDASim.

Microbiome Differential Abundance Simulation

Bioconductor version: Development (3.22)

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson

Maintainer: Justin Williams <williazo at ucla.edu>

Citation (from within R, enter citation("microbiomeDASim")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("microbiomeDASim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiomeDASim")
Details biocViews Microbiome, Software, Visualization Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License MIT + file LICENSE Depends R (>= 3.6.0) Imports graphics, ggplot2, MASS, tmvtnorm, Matrix, mvtnorm, pbapply, stats, phyloseq, metagenomeSeq, Biobase System Requirements URL https://github.com/williazo/microbiomeDASim Bug Reports https://github.com/williazo/microbiomeDASim/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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