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Bioconductor - microbiome (development version)

microbiome

This is the development version of microbiome; for the stable release version, see microbiome.

Microbiome Analytics

Bioconductor version: Development (3.22)

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre] ORCID: 0000-0001-5537-637X , Sudarshan Shetty [aut] ORCID: 0000-0001-7280-9915

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("microbiome")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("microbiome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")
Details biocViews Metagenomics, Microbiome, Sequencing, Software, SystemsBiology Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License BSD_2_clause + file LICENSE Depends R (>= 3.6.0), phyloseq, ggplot2 Imports Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan System Requirements URL http://microbiome.github.io/microbiome Bug Reports https://github.com/microbiome/microbiome/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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