This is the development version of methylscaper; for the stable release version, see methylscaper.
Visualization of Methylation DataBioconductor version: Development (3.22)
methylscaper is an R package for processing and visualizing data jointly profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The package supports both single-cell and single-molecule data, and a common interface for jointly visualizing both data types through the generation of ordered representational methylation-state matrices. The Shiny app allows for an interactive seriation process of refinement and re-weighting that optimally orders the cells or DNA molecules to discover methylation patterns and nucleosome positioning.
Author: Bacher Rhonda [aut, cre], Parker Knight [aut]
Maintainer: Bacher Rhonda <rbacher at ufl.edu>
Citation (from within R, entercitation("methylscaper")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("methylscaper")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylscaper")Follow Installation instructions to use this package in your R session.
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