This is the development version of mbQTL; for the stable release version, see mbQTL.
mbQTL: A package for SNP-Taxa mGWAS analysisBioconductor version: Development (3.22)
mbQTL is a statistical R package for simultaneous 16srRNA,16srDNA (microbial) and variant, SNP, SNV (host) relationship, correlation, regression studies. We apply linear, logistic and correlation based statistics to identify the relationships of taxa, genus, species and variant, SNP, SNV in the infected host. We produce various statistical significance measures such as P values, FDR, BC and probability estimation to show significance of these relationships. Further we provide various visualization function for ease and clarification of the results of these analysis. The package is compatible with dataframe, MRexperiment and text formats.
Author: Mercedeh Movassagh [aut, cre] ORCID: 0000-0001-7690-0230 , Steven Schiff [aut], Joseph N Paulson [aut]
Maintainer: Mercedeh Movassagh <mercedeh.movassagh at yale.edu>
Citation (from within R, entercitation("mbQTL")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mbQTL")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mbQTL")Follow Installation instructions to use this package in your R session.
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