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Bioconductor - lmdme (development version)

lmdme

This is the development version of lmdme; for the stable release version, see lmdme.

Linear Model decomposition for Designed Multivariate Experiments

Bioconductor version: Development (3.22)

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Citation (from within R, enter citation("lmdme")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("lmdme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lmdme")
lmdme: linear model framework for PCA/PLS analysis of ANOVA decomposition on Designed Multivariate Experiments in R PDF R Script Reference Manual PDF NEWS Text Details biocViews Cancer, DifferentialExpression, ExperimentData, Microarray, OneChannel, Software, TwoChannel, Visualization Version 1.51.0 In Bioconductor since BioC 2.11 (R-2.15) (13 years) License GPL (>=2) Depends R (>= 2.14.1), pls, stemHypoxia Imports stats, methods, limma System Requirements URL http://www.bdmg.com.ar/?page_id=38 See More Suggests Linking To Enhances parallel Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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