This is the development version of lisaClust; for the stable release version, see lisaClust.
lisaClust: Clustering of Local Indicators of Spatial AssociationBioconductor version: Development (3.22)
lisaClust provides a series of functions to identify and visualise regions of tissue where spatial associations between cell-types is similar. This package can be used to provide a high-level summary of cell-type colocalization in multiplexed imaging data that has been segmented at a single-cell resolution.
Author: Ellis Patrick [aut, cre], Nicolas Canete [aut], Nicholas Robertson [ctb], Alex Qin [ctb], Shreya shreya.rajeshrao@sydney.edu.au Rao [ctb]
Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>
Citation (from within R, entercitation("lisaClust")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("lisaClust")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lisaClust")Follow Installation instructions to use this package in your R session.
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