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Bioconductor - lapmix (development version)

lapmix

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of lapmix; for the stable release version, see lapmix.

Laplace Mixture Model in Microarray Experiments

Bioconductor version: Development (3.22)

Laplace mixture modelling of microarray experiments. A hierarchical Bayesian approach is used, and the hyperparameters are estimated using empirical Bayes. The main purpose is to identify differentially expressed genes.

Author: Yann Ruffieux, contributions from Debjani Bhowmick, Anthony C. Davison, and Darlene R. Goldstein

Maintainer: Yann Ruffieux <yann.ruffieux at epfl.ch>

Citation (from within R, enter citation("lapmix")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("lapmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation Details biocViews DifferentialExpression, Microarray, OneChannel, Software Version 1.75.0 In Bioconductor since BioC 1.9 (R-2.4) (19 years) License GPL (>= 2) Depends R (>= 2.6.0), stats Imports Biobase, graphics, grDevices, methods, stats, tools, utils System Requirements URL http://www.r-project.org http://www.bioconductor.org http://stat.epfl.ch See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Windows Binary (x86_64) macOS Binary (x86_64) macOS Binary (arm64) Source Repository git clone https://git.bioconductor.org/packages/lapmix Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lapmix Package Short Url https://bioconductor.org/packages/lapmix/ Package Downloads Report Download Stats

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