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Bioconductor - igvR (development version)

igvR

This is the development version of igvR; for the stable release version, see igvR.

igvR: integrative genomics viewer

Bioconductor version: Development (3.22)

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("igvR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("igvR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("igvR")
Details biocViews GenomeBrowsers, Software, ThirdPartyClient, Visualization Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License MIT + file LICENSE Depends R (>= 3.5.0), GenomicRanges, GenomicAlignments, BrowserViz(>= 2.17.1) Imports methods, BiocGenerics, httpuv, utils, rtracklayer, VariantAnnotation, RColorBrewer, httr System Requirements URL https://gladkia.github.io/igvR/ See More Package Archives

Follow Installation instructions to use this package in your R session.


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