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Bioconductor - iSEEu (development version)

iSEEu

This is the development version of iSEEu; for the stable release version, see iSEEu.

iSEE Universe

Bioconductor version: Development (3.22)

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] ORCID: 0000-0003-3899-3872 , Charlotte Soneson [aut] ORCID: 0000-0003-3833-2169 , Federico Marini [aut] ORCID: 0000-0003-3252-7758 , Aaron Lun [aut] ORCID: 0000-0002-3564-4813 , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")

Details biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization Version 1.21.0 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License MIT + file LICENSE Depends iSEE, iSEEhex Imports methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce System Requirements URL https://github.com/iSEE/iSEEu Bug Reports https://github.com/iSEE/iSEEu/issues See More Suggests scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr Linking To Enhances Depends On Me Imports Me iSEEfier Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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