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Bioconductor - iSEEtree (development version)

iSEEtree

This is the development version of iSEEtree; for the stable release version, see iSEEtree.

Interactive visualisation for microbiome data

Bioconductor version: Development (3.22)

iSEEtree is an extension of iSEE for the TreeSummarizedExperiment data container. It provides interactive panel designs to explore hierarchical datasets, such as the microbiome and cell lines.

Author: Giulio Benedetti [aut, cre] ORCID: 0000-0002-8732-7692 , Ely Seraidarian [ctb] ORCID: 0009-0008-8602-093X , Leo Lahti [aut] ORCID: 0000-0001-5537-637X

Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>

Citation (from within R, enter citation("iSEEtree")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEtree")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEtree")
Details biocViews DataImport, GUI, Microbiome, ShinyApps, Software, Visualization Version 1.3.1 In Bioconductor since BioC 3.20 (R-4.4) (0.5 years) License Artistic-2.0 Depends R (>= 4.4.0), iSEE(>= 2.19.4) Imports ape, ggplot2, ggtree, grDevices, methods, miaViz, purrr, S4Vectors, shiny, mia, shinyWidgets, SingleCellExperiment, SummarizedExperiment, tidygraph, TreeSummarizedExperiment, utils System Requirements URL https://github.com/microbiome/iSEEtree Bug Reports https://github.com/microbiome/iSEEtree/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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