This is the development version of iSEEpathways; for the stable release version, see iSEEpathways.
iSEE extension for panels related to pathway analysisBioconductor version: Development (3.22)
This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of pathway analysis results. This package does not perform pathway analysis. Instead, it provides methods to embed precomputed pathway analysis results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.
Author: Kevin Rue-Albrecht [aut, cre] ORCID: 0000-0003-3899-3872 , Thomas Sandmann [ctb] ORCID: 0000-0002-6601-8890 , Charlotte Soneson [aut] ORCID: 0000-0003-3833-2169 , Federico Marini [ctb] ORCID: 0000-0003-3252-7758 , Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
Citation (from within R, entercitation("iSEEpathways")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("iSEEpathways")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEpathways")Follow Installation instructions to use this package in your R session.
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