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Bioconductor - iCNV (development version)

iCNV

This is the development version of iCNV; for the stable release version, see iCNV.

Integrated Copy Number Variation detection

Bioconductor version: Development (3.22)

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iCNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCNV")
Details biocViews CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-2 Depends R (>= 3.3.1), CODEX Imports fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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