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Bioconductor - heatmaps (development version)

heatmaps

This is the development version of heatmaps; for the stable release version, see heatmaps.

Flexible Heatmaps for Functional Genomics and Sequence Features

Bioconductor version: Development (3.22)

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

Author: Malcolm Perry <mgperry32 at gmail.com>

Maintainer: Malcolm Perry <mgperry32 at gmail.com>

Citation (from within R, enter citation("heatmaps")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("heatmaps")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("heatmaps")
Details biocViews FunctionalGenomics, SequenceMatching, Software, Visualization Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 3.5.0) Imports methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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