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Bioconductor - genefilter (development version)

genefilter

This is the development version of genefilter; for the stable release version, see genefilter.

genefilter: methods for filtering genes from high-throughput experiments

Bioconductor version: Development (3.22)

Some basic functions for filtering genes.

Author: Robert Gentleman [aut], Vincent J. Carey [aut], Wolfgang Huber [aut], Florian Hahne [aut], Emmanuel Taiwo [ctb] ('howtogenefinder' vignette translation from Sweave to RMarkdown / HTML.), Khadijah Amusat [ctb] (Converted genefilter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("genefilter")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("genefilter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefilter")

03 - Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010) PDF R Script howtogenefinder.knit HTML R Script Using the genefilter function to filter genes from a microarray HTML R Script Reference Manual PDF NEWS Text Details See More Suggests class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer, BiocStyle, knitr Linking To Enhances Depends On Me CNTools, GeneMeta, sva, Hiiragi2013, maEndToEnd, rnaseqGene, lmQCM Imports Me a4Base, annmap, arrayQualityMetrics, broadSeq, Category, cbaf, ClassifyR, countsimQC, covRNA, DEXSeq, GSRI, metaseqR2, methylCC, methylumi, minfi, MLInterfaces, mogsa, NBAMSeq, pcaExplorer, PECA, phenoTest, protGear, SGCP, spatialHeatmap, SpliceWiz, tilingArray, XDE, zinbwave, FlowSorted.Blood.EPIC, IHWpaper, causalBatch, CoNI, dGAselID, netgsa Suggests Me annotate, BioNet, categoryCompare, clusterStab, codelink, cola, compcodeR, DelayedArray, EnrichedHeatmap, factDesign, ffpe, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, HDF5Array, logicFS, lumi, MMUPHin, npGSEA, oligo, phyloseq, pvac, qpgraph, rtracklayer, siggenes, simplifyEnrichment, TCGAbiolinks, topGO, BloodCancerMultiOmics2017, curatedBladderData, curatedOvarianData, estrogen, ffpeExampleData, gageData, MAQCsubset, RforProteomics, rheumaticConditionWOLLBOLD, Single.mTEC.Transcriptomes, maGUI, oncoPredict, SuperLearner Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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