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Bioconductor - gDRcore (development version)

gDRcore

This is the development version of gDRcore; for the stable release version, see gDRcore.

Processing functions and interface to process and analyze drug dose-response data

Bioconductor version: Development (3.22)

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Author: Bartosz Czech [aut] ORCID: 0000-0002-9908-3007 , Arkadiusz Gladki [cre, aut] ORCID: 0000-0002-7059-6378 , Marc Hafner [aut] ORCID: 0000-0003-1337-7598 , Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Marcin Kamianowski [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRcore")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRcore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRcore")
Details biocViews ShinyApps, Software Version 1.7.4 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License Artistic-2.0 Depends R (>= 4.2) Imports BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils(>= 1.7.1), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table System Requirements URL https://github.com/gdrplatform/gDRcore https://gdrplatform.github.io/gDRcore/ Bug Reports https://github.com/gdrplatform/gDRcore/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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