This is the development version of funtooNorm; for the stable release version, see funtooNorm.
Normalization Procedure for Infinium HumanMethylation450 BeadChip KitBioconductor version: Development (3.22)
Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.
Author: Celia Greenwood <celia.greenwood at mcgill.ca>,Stepan Grinek <stepan.grinek at ladydavis.ca>, Maxime Turgeon <maxime.turgeon at mail.mcgill.ca>, Kathleen Klein <kathleen.klein at mail.mcgill.ca>
Maintainer: Kathleen Klein <kathleen.klein at mail.mcgill.ca>
Citation (from within R, entercitation("funtooNorm")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("funtooNorm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews DNAMethylation, Normalization, Preprocessing, Software Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License GPL-3 Depends R (>= 3.4) Imports pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats System Requirements URL See More Package ArchivesFollow Installation instructions to use this package in your R session.
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