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Bioconductor - flowAI (development version)

flowAI

This is the development version of flowAI; for the stable release version, see flowAI.

Automatic and interactive quality control for flow cytometry data

Bioconductor version: Development (3.22)

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco [aut], Chen Hao [ctb]

Maintainer: Gianni Monaco <mongianni1 at gmail.com>

Citation (from within R, enter citation("flowAI")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")
Automatic and GUI methods to do quality control on Flow cytometry Data HTML R Script Reference Manual PDF NEWS Text Details biocViews BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software Version 1.39.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL (>= 2) Depends R (>= 4.3.0) Imports ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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