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Bioconductor - fdrame (development version)

fdrame

This is the development version of fdrame; for the stable release version, see fdrame.

FDR adjustments of Microarray Experiments (FDR-AME)

Bioconductor version: Development (3.22)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Citation (from within R, enter citation("fdrame")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fdrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")
Annotation Overview PDF Reference Manual PDF Details See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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