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Bioconductor - epivizrData (development version)

epivizrData

This is the development version of epivizrData; for the stable release version, see epivizrData.

Data Management API for epiviz interactive visualization app

Bioconductor version: Development (3.22)

Serve data from Bioconductor Objects through a WebSocket connection.

Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epivizrData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrData")
Details biocViews Infrastructure, Software, Visualization Version 1.37.1 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License MIT + file LICENSE Depends R (>= 3.4), methods, epivizrServer(>= 1.1.1), Biobase Imports S4Vectors, GenomicRanges(>= 1.61.1), SummarizedExperiment(>= 1.39.1), OrganismDbi, GenomicFeatures(>= 1.61.4), Seqinfo, GenomeInfoDb(>= 1.45.5), IRanges, ensembldb(>= 2.33.1) System Requirements URL http://epiviz.github.io Bug Reports https://github.com/epiviz/epivizrData/issues See More Suggests testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI, matrixStats Linking To Enhances Depends On Me Imports Me epivizr, epivizrChart, scTreeViz Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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