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Bioconductor - epigenomix (development version)

epigenomix

This is the development version of epigenomix; for the stable release version, see epigenomix.

Epigenetic and gene transcription data normalization and integration with mixture models

Bioconductor version: Development (3.22)

A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.

Author: Hans-Ulrich Klein, Martin Schaefer

Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>

Citation (from within R, enter citation("epigenomix")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epigenomix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epigenomix")
Details biocViews ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software Version 1.49.0 In Bioconductor since BioC 2.12 (R-3.0) (12.5 years) License LGPL-3 Depends R (>= 3.5.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment Imports BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray System Requirements URL See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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