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Bioconductor - drugTargetInteractions (development version)

drugTargetInteractions

This is the development version of drugTargetInteractions; for the stable release version, see drugTargetInteractions.

Drug-Target Interactions

Bioconductor version: Development (3.22)

Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.

Author: Thomas Girke [cre, aut]

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("drugTargetInteractions")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("drugTargetInteractions")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drugTargetInteractions")
Details biocViews BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software Version 1.17.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License Artistic-2.0 Depends methods, R (>= 4.1) Imports utils, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, dplyr, rappdirs, AnnotationFilter, S4Vectors System Requirements URL https://github.com/girke-lab/drugTargetInteractions Bug Reports https://github.com/girke-lab/drugTargetInteractions See More Package Archives

Follow Installation instructions to use this package in your R session.


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