This is the development version of dmGsea; to use it, please install the devel version of Bioconductor.
Efficient Gene Set Enrichment Analysis for DNA Methylation DataBioconductor version: Development (3.22)
The R package dmGsea provides efficient gene set enrichment analysis specifically for DNA methylation data. It addresses key biases, including probe dependency and varying probe numbers per gene. The package supports Illumina 450K, EPIC, and mouse methylation arrays. Users can also apply it to other omics data by supplying custom probe-to-gene mapping annotations. dmGsea is flexible, fast, and well-suited for large-scale epigenomic studies.
Author: Zongli Xu [cre, aut] ORCID: 0000-0002-9034-8902 , Alison Motsinger-Reif [aut], Liang Niu [aut], Zongli Xu [fnd]
Maintainer: Zongli Xu <xuz at niehs.nih.gov>
Citation (from within R, entercitation("dmGsea")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("dmGsea")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dmGsea")Follow Installation instructions to use this package in your R session.
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