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Bioconductor - covEB (development version)

covEB

This is the development version of covEB; for the stable release version, see covEB.

Empirical Bayes estimate of block diagonal covariance matrices

Bioconductor version: Development (3.22)

Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.

Author: C. Pacini

Maintainer: C. Pacini <clarepacini at gmail.com>

Citation (from within R, enter citation("covEB")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("covEB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("covEB")
Details biocViews Bayesian, GeneExpression, ImmunoOncology, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL-3 Depends R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats, LaplacesDemon, Matrix Imports System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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