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Bioconductor - chevreulShiny (development version)

chevreulShiny

This is the development version of chevreulShiny; for the stable release version, see chevreulShiny.

Tools for managing SingleCellExperiment objects as projects

Bioconductor version: Development (3.22)

Tools for managing SingleCellExperiment objects as projects. Includes functions for analysis and visualization of single-cell data. Also included is a shiny app for visualization of pre-processed scRNA data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Author: Kevin Stachelek [aut, cre] ORCID: 0000-0003-2085-695X , Bhavana Bhat [aut]

Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>

Citation (from within R, enter citation("chevreulShiny")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chevreulShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chevreulShiny")
Details biocViews Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization Version 1.1.2 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License MIT + file LICENSE Depends R (>= 4.5.0), SingleCellExperiment, shiny (>= 1.6.0), shinydashboard, chevreulProcess, chevreulPlot Imports alabaster.base, clustree, ComplexHeatmap, DataEditR (>= 0.0.9), DBI, dplyr, DT, EnhancedVolcano, fs, future, ggplot2, ggplotify, grDevices, methods, patchwork, plotly, purrr, rappdirs, readr, RSQLite, S4Vectors, scales, shinyFiles, shinyhelper, shinyjs, shinyWidgets, stats, stringr, tibble, tidyr, tidyselect, utils, waiter, wiggleplotr System Requirements URL https://github.com/whtns/chevreulShiny https://whtns.github.io/chevreulShiny/ Bug Reports https://github.com/cobriniklab/chevreulShiny/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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