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Bioconductor - cellxgenedp (development version)

cellxgenedp

This is the development version of cellxgenedp; for the stable release version, see cellxgenedp.

Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal

Bioconductor version: Development (3.22)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] ORCID: 0000-0002-5874-8148 , Kayla Interdonato [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("cellxgenedp")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellxgenedp")
Details biocViews DataImport, SingleCell, Software, ThirdPartyClient Version 1.13.1 In Bioconductor since BioC 3.15 (R-4.2) (3 years) License Artistic-2.0 Depends R (>= 4.1.0), dplyr Imports httr, curl, utils, tools, cli, shiny, DT, rjsoncons System Requirements URL https://mtmorgan.github.io/cellxgenedp/ https://github.com/mtmorgan/cellxgenedp Bug Reports https://github.com/mtmorgan/cellxgenedp/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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