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Bioconductor - cancerclass (development version)

cancerclass

This is the development version of cancerclass; for the stable release version, see cancerclass.

Development and validation of diagnostic tests from high-dimensional molecular data

Bioconductor version: Development (3.22)

The classification protocol starts with a feature selection step and continues with nearest-centroid classification. The accurarcy of the predictor can be evaluated using training and test set validation, leave-one-out cross-validation or in a multiple random validation protocol. Methods for calculation and visualization of continuous prediction scores allow to balance sensitivity and specificity and define a cutoff value according to clinical requirements.

Author: Jan Budczies, Daniel Kosztyla

Maintainer: Daniel Kosztyla <danielkossi at hotmail.com>

Citation (from within R, enter citation("cancerclass")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cancerclass")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cancerclass")
Cancerclass: An R package for development and validation of diagnostic tests from high-dimensional molecular data PDF R Script Reference Manual PDF Details See More Suggests cancerdata Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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