This is the development version of biomformat; for the stable release version, see biomformat.
An interface package for the BIOM file formatBioconductor version: Development (3.22)
This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.
Author: Paul J. McMurdie <mcmurdie at alumni.stanford.edu> and Joseph N Paulson <jpaulson at jimmy.harvard.edu>
Maintainer: Paul J. McMurdie <mcmurdie at alumni.stanford.edu>
Citation (from within R, entercitation("biomformat")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biomformat")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biomformat")Follow Installation instructions to use this package in your R session.
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