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Bioconductor - baySeq (development version)

baySeq

This is the development version of baySeq; for the stable release version, see baySeq.

Empirical Bayesian analysis of patterns of differential expression in count data

Bioconductor version: Development (3.22)

This package identifies differential expression in high-throughput 'count' data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.

Author: Thomas J. Hardcastle [aut], Samuel Granjeaud [cre] ORCID: 0000-0001-9245-1535

Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>

Citation (from within R, enter citation("baySeq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("baySeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("baySeq")
Details biocViews Bayesian, Coverage, DifferentialExpression, MultipleComparison, SAGE, Sequencing, Software Version 2.43.0 In Bioconductor since BioC 2.5 (R-2.10) (15.5 years) License GPL-3 Depends R (>= 2.3.0), methods Imports edgeR, GenomicRanges, abind, parallel, graphics, stats, utils System Requirements URL https://github.com/samgg/baySeq Bug Reports https://github.com/samgg/baySeq/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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