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Bioconductor - basilisk (development version)

basilisk

This is the development version of basilisk; for the stable release version, see basilisk.

Freezing Python Dependencies Inside Bioconductor Packages

Bioconductor version: Development (3.22)

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("basilisk")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("basilisk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("basilisk")
Details See More Suggests knitr, rmarkdown, BiocStyle, testthat, callr Linking To Enhances Depends On Me scviR Imports Me BiocHail, BiocSklearn, cbpManager, cfTools, crisprScore, densvis, DNAcycP2, ELViS, FLAMES, HiCool, MACSr, MOFA2, ontoProc, orthos, Pirat, Rcwl, recountmethylation, ReUseData, scifer, scPipe, SimBu, sketchR, snifter, spatialDE, velociraptor, zellkonverter Suggests Me CuratedAtlasQueryR, SUMO Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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