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Bioconductor - alabaster.sfe (development version)

alabaster.sfe

This is the development version of alabaster.sfe; for the stable release version, see alabaster.sfe.

Language agnostic on disk serialization of SpatialFeatureExperiment

Bioconductor version: Development (3.22)

Builds upon the existing ArtifactDB project, expending alabaster.spatial for language agnostic on disk serialization of SpatialFeatureExperiment.

Author: Lambda Moses [aut, cre] ORCID: 0000-0002-7092-9427

Maintainer: Lambda Moses <dl3764 at columbia.edu>

Citation (from within R, enter citation("alabaster.sfe")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("alabaster.sfe")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.sfe")
Details biocViews DataRepresentation, Software, Spatial Version 1.1.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License MIT + file LICENSE Depends R (>= 4.1.0), SpatialFeatureExperiment(>= 1.9.3), alabaster.base Imports alabaster.sce, alabaster.spatial(>= 1.5.2), EBImage, jsonlite, methods, RBioFormats, S4Vectors, sfarrow, SingleCellExperiment, spatialreg, spdep, SummarizedExperiment, terra, xml2 System Requirements URL https://pachterlab.github.io/alabaster.sfe/ Bug Reports https://github.com/pachterlab/alabaster.sfe/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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