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Bioconductor - aCGH (development version)

aCGH

This is the development version of aCGH; for the stable release version, see aCGH.

Classes and functions for Array Comparative Genomic Hybridization data

Bioconductor version: Development (3.22)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Citation (from within R, enter citation("aCGH")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("aCGH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aCGH")
Details biocViews CopyNumberVariation, DataImport, Genetics, Software Version 1.87.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License GPL-2 Depends R (>= 2.10), cluster, survival, multtest Imports Biobase, grDevices, graphics, methods, stats, splines, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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