This is the development version of XeniumIO; for the stable release version, see XeniumIO.
Import and represent Xenium data from the 10X Xenium AnalyzerBioconductor version: Development (3.22)
The package allows users to readily import spatial data obtained from the 10X Xenium Analyzer pipeline. Supported formats include 'parquet', 'h5', and 'mtx' files. The package mainly represents data as SpatialExperiment objects.
Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Dario Righelli [ctb], Estella Dong [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
Citation (from within R, entercitation("XeniumIO")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("XeniumIO")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XeniumIO")Follow Installation instructions to use this package in your R session.
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