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Bioconductor - TurboNorm (development version)

TurboNorm

This is the development version of TurboNorm; for the stable release version, see TurboNorm.

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Development (3.22)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

Citation (from within R, enter citation("TurboNorm")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TurboNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TurboNorm")
Details biocViews CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel Version 1.57.0 In Bioconductor since BioC 2.8 (R-2.13) (14 years) License LGPL Depends R (>= 2.12.0), convert, limma(>= 1.7.0), marray Imports stats, grDevices, affy, lattice System Requirements URL http://www.humgen.nl/MicroarrayAnalysisGroup.html See More Package Archives

Follow Installation instructions to use this package in your R session.

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