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Bioconductor - TEQC (development version)

TEQC

This is the development version of TEQC; for the stable release version, see TEQC.

Quality control for target capture experiments

Bioconductor version: Development (3.22)

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Sarah Bonnin <Sarah.Bonnin at crg.eu>

Citation (from within R, enter citation("TEQC")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TEQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TEQC")
Details See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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