This is the development version of SynExtend; for the stable release version, see SynExtend.
Tools for Working With Synteny ObjectsBioconductor version: Development (3.22)
Shared order between genomic sequences provide a great deal of information. Synteny objects produced by the R package DECIPHER provides quantitative information about that shared order. SynExtend provides tools for extracting information from Synteny objects.
Author: Nicholas Cooley [aut, cre] ORCID: 0000-0002-6029-304X , Aidan Lakshman [aut, ctb] ORCID: 0000-0002-9465-6785 , Adelle Fernando [ctb], Erik Wright [aut]
Maintainer: Nicholas Cooley <npc19 at pitt.edu>
Citation (from within R, entercitation("SynExtend")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SynExtend")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SynExtend")Follow Installation instructions to use this package in your R session.
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