This is the development version of SpectriPy; to use it, please install the devel version of Bioconductor.
Enhancing Cross-Language Mass Spectrometry Data Analysis with R and PythonBioconductor version: Development (3.22)
The SpectriPy package allows integration of Python-based MS analysis code with the Spectra package. Spectra objects can be converted into Python MS data structures. In addition, SpectriPy integrates and wraps the similarity scoring and processing/filtering functions from the Python matchms package into R.
Author: Michael Witting [aut] ORCID: 0000-0002-1462-4426 , Johannes Rainer [aut, cre] ORCID: 0000-0002-6977-7147 , Carolin Huber [aut] ORCID: 0000-0002-9355-8948 , Helge Hecht [ctb] ORCID: 0000-0001-6744-996X , Marilyn De Graeve [aut] ORCID: 0000-0001-6916-401X , Wout Bittremieux [aut] ORCID: 0000-0002-3105-1359 , Thomas Naake [aut] ORCID: 0000-0001-7917-5580 , Victor Chrone [ctb] ORCID: 0009-0007-2121-4066 , Matthias Anagho-Mattanovich [ctb] ORCID: 0000-0001-7561-7898 , Pierre Marchal [ctb] ORCID: 0009-0006-6567-6257 , Philippine Louail [ctb] ORCID: 0009-0007-5429-6846
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
Citation (from within R, entercitation("SpectriPy")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SpectriPy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software Version 0.99.7 In Bioconductor since BioC 3.22 (R-4.5) License Artistic-2.0 Depends R (>= 4.1.0), reticulate (>= 1.42.0) Imports Spectra(>= 1.17.7), IRanges, S4Vectors, MsCoreUtils, ProtGenerics, methods System Requirements python (>= 3.10), pandoc, quarto URL https://github.com/RforMassSpectrometry/SpectriPy Bug Reports https://github.com/RforMassSpectrometry/SpectriPy/issues See More Package ArchivesFollow Installation instructions to use this package in your R session.
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