This is the development version of Seqinfo; to use it, please install the devel version of Bioconductor.
A simple S4 class for storing basic information about a collection of genomic sequencesBioconductor version: Development (3.22)
The Seqinfo class stores the names, lengths, circularity flags, and genomes for a particular collection of sequences. These sequences are typically the chromosomes and/or scaffolds of a specific genome assembly of a given organism. Seqinfo objects are rarely used as standalone objects. Instead, they are used as part of higher-level objects to represent their seqinfo() component. Examples of such higher-level objects are GRanges, RangedSummarizedExperiment, VCF, GAlignments, etc... defined in other Bioconductor infrastructure packages.
Author: Hervé Pagès [aut, cre] ORCID: 0009-0002-8272-4522
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
Citation (from within R, entercitation("Seqinfo")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Seqinfo")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Seqinfo")Follow Installation instructions to use this package in your R session.
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