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Bioconductor - SIMD (development version)

SIMD

This is the development version of SIMD; for the stable release version, see SIMD.

Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

Bioconductor version: Development (3.22)

This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP-seq data. It uses statistical framework and EM algorithm, to identify differentially expressed CpG sites. The methods on this package are described in the article 'Methylation-level Inferences and Detection of Differential Methylation with Medip-seq Data' by Yan Zhou, Jiadi Zhu, Mingtao Zhao, Baoxue Zhang, Chunfu Jiang and Xiyan Yang (2018, pending publication).

Author: Yan Zhou

Maintainer: Jiadi Zhu <2160090406 at email.szu.edu.cn>

Citation (from within R, enter citation("SIMD")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SIMD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SIMD")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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