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Bioconductor - SCnorm (development version)

SCnorm

This is the development version of SCnorm; for the stable release version, see SCnorm.

Normalization of single cell RNA-seq data

Bioconductor version: Development (3.22)

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")
Details biocViews ImmunoOncology, Normalization, RNASeq, SingleCell, Software Version 1.31.1 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License GPL (>= 2) Depends R (>= 3.4.0) Imports SingleCellExperiment, SummarizedExperiment, stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, S4Vectors, ggplot2, forcats, BiocGenerics System Requirements URL https://github.com/rhondabacher/SCnorm Bug Reports https://github.com/rhondabacher/SCnorm/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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