This is the development version of RgnTX; for the stable release version, see RgnTX.
Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguityBioconductor version: Development (3.22)
RgnTX allows the integration of transcriptome annotations so as to model the complex alternative splicing patterns. It supports the testing of transcriptome elements without clear isoform association, which is often the real scenario due to technical limitations. It involves functions that do permutaion test for evaluating association between features and transcriptome regions.
Author: Yue Wang [aut, cre], Jia Meng [aut]
Maintainer: Yue Wang <yue.wang19 at student.xjtlu.edu.cn>
Citation (from within R, entercitation("RgnTX")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RgnTX")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RgnTX")Follow Installation instructions to use this package in your R session.
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