This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of ReactomeGraph4R; for the stable release version, see ReactomeGraph4R.
Interface for the Reactome Graph DatabaseBioconductor version: Development (3.22)
Pathways, reactions, and biological entities in Reactome knowledge are systematically represented as an ordered network. Instances are represented as nodes and relationships between instances as edges; they are all stored in the Reactome Graph Database. This package serves as an interface to query the interconnected data from a local Neo4j database, with the aim of minimizing the usage of Neo4j Cypher queries.
Author: Chi-Lam Poon [aut, cre] ORCID: 0000-0001-6298-7099 , Reactome [cph]
Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>
Citation (from within R, entercitation("ReactomeGraph4R")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ReactomeGraph4R")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews DataImport, GraphAndNetwork, Network, Pathways, Reactome, Software Version 1.17.1 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License Apache License (>= 2) Depends R (>= 4.1) Imports neo4r, utils, getPass, jsonlite, purrr, magrittr, data.table, rlang, ReactomeContentService4R, doParallel, parallel, foreach System Requirements URL https://github.com/reactome/ReactomeGraph4R Bug Reports https://github.com/reactome/ReactomeGraph4R/issues See More Package ArchivesFollow Installation instructions to use this package in your R session.
Source Package Windows Binary (x86_64) macOS Binary (x86_64) macOS Binary (arm64) Source Repository git clone https://git.bioconductor.org/packages/ReactomeGraph4R Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReactomeGraph4R Package Short Url https://bioconductor.org/packages/ReactomeGraph4R/ Package Downloads Report Download StatsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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